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Similarity Matrix of Proteins (SIMAP) is a database of protein similarities created using volunteer computing.[1][2] It is freely accessible for scientific purposes. SIMAP uses the FASTA algorithm to precalculate protein similarity, while another application uses hidden Markov models to search for protein domains. SIMAP is a joint project of the Technical University of Munich, the Helmholtz Zentrum München, and the University of Vienna.
- ^ Arnold, R.; Rattei, T.; Tischler, P.; Truong, M.-D.; Stümpflen, V.; Mewes, H. W. (2005). "SIMAP--The similarity matrix of proteins". Bioinformatics. 21 (Suppl 2): ii42–ii46. doi:10.1093/bioinformatics/bti1107. ISSN 1367-4803. PMC 1347468. PMID 16204123.
- ^ Rattei, T.; Arnold, R.; Tischler, P.; Lindner, D.; Stümpflen, V.; Mewes, H. W. (2006). "SIMAP: the similarity matrix of proteins". Nucleic Acids Research. 34 (90001): D252–D256. doi:10.1093/nar/gkj106. ISSN 0305-1048. PMC 1347468. PMID 16381858.